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Article Tip cell overtaking occurs as a side effect of sprouting in computational models of angiogenesis [+ Supplementary Material]
Sonja E.M. Boas and Roeland M.H. Merks (2015) Tip cell overtaking occurs as a side effect of sprouting in computational models of angiogenesis. BMC Systems ...
Article A global sensitivity analysis approach for morphogenesis models
Sonja E.M. Boas, Maria I. Navarro Jimenez, Roeland M.H. Merks, Joke G. Blom (2015) A global sensitivity analysis approach for morphogenesis models. BMC Systems ...
Article Simulation of Organ Patterning on the Floral Meristem Using a Polar Auxin Transport Model
van Mourik S, Kaufmann K, van Dijk ADJ, Angenent GC, Merks RMH, Molenaar J. (2012). Simulation of Organ Patterning on the Floral Meristem Using a Polar Auxin ...
Article Cell-based modeling
Roeland Merks (2015) Cell-based modeling. In: Björn Engquist (Ed.) Encyclopedia of Applied and Computational Mathematics, pp. 195-201. Springer-Verlag Berlin ...
Article Blood Vessel Tortuosity Selects against Evolution of Agressive Tumor Cells in Confined Tissue Environments: a Modeling Approach
András Szabó and Roeland M.H. Merks. Blood Vessel Tortuosity Selects against Evolution of Agressive Tumor Cells in Confined Tissue Environments: a Modeling ...
Article Synergy of Cell-Cell Repulsion and Vacuolation in a Computational Model of Lumen Formation
Sonja E. M. Boas and Roeland M. H. Merks (2014) Synergy of Cell-Cell Repulsion and Vacuolation in a Computational Model of Lumen Formation. Journal of The ...
Article Large-scale parameter studies of cell-based models of tissue morphogenesis using CompuCell3D or VirtualLeaf
Margriet M. Palm and Roeland M.H. Merks (2015). Large-scale parameter studies of cell-based models of tissue morphogenesis using CompuCell3D or VirtualLeaf. ...
Article On the evolution of morphogenetic models: mechano-chemical interactions and an integrated view of cell differentiation, growth, pattern formation and morphogenesis
Urdy, Séverine, On the evolution of morphogenetic models: mechano-chemical interactions and an integrated view of cell differentiation, growth, pattern ...
Article Vascular networks due to dynamically arrested crystalline ordering of elongated cells
Margriet M. Palm, Roeland M. H. Merks (2013) Vascular networks due to dynamically arrested crystalline ordering of elongated cells. Physical Review E 87, ...
Article Hyaluronan: A critical regulator of endothelial-to-mesenchymal transition during cardiac valve formation.
Anne Karine Lagendijk, András Szabó, Roeland M.H. Merks and Jeroen Bakkers. Hyaluronan: A critical regulator of endothelial-to-mesenchymal transition during ...
Article Integrating two patterning processes in the flower
Simon van Mourik, Aalt D.J. van Dijk, Gerco C. Angenent, Roeland M.H. Merks and Jaap Molenaar (2012). Integrating two patterning processes in the flower. ...
Article Cellular Potts modeling of tumor growth, tumor invasion and tumor evolution
Szabó A and Merks RMH (2013). Cellular Potts modeling of tumor growth, tumor invasion and tumor evolution. Front. Oncol. 3:87. doi: 10.3389/fonc.2013.00087
Article Modeling Morphogenesis in silico and in vitro: Towards Quantitative, Predictive, Cell-based Modeling
Roeland M.H. Merks and Pieter Koolwijk. 2009. Modeling Morphogenesis in silico and in vitro: Towards Quantitative, Predictive, Cell-based Modeling. ...
Article Individual cell-based models of cell scatter of ARO and MLP-29 cells inresponse to hepatocyte growth factor
Marco Scianna, Roeland M.H. Merks, Luigi Preziosi, and Enzo Medico. 2009. Individual cell-based models of cell scatter of ARO and MLP-29 cells inresponse to ...
Article Contact-inhibited chemotactic motility in de novo and sprouting blood vessel growth
Roeland M.H. Merks, Erica D. Perryn, Abbas Shirinifard and James A. Glazier. 2008. Contact-inhibited chemotactic motility in de novo and sprouting blood ...
Article Glycated Collagen I Impairs Angiogenesis In Vitro - A Study Using An Innovative Chamber For Cell Research
Sergey Brodsky, Roeland M. H. Merks, Natalia Mendelev, Cara Goo, Jun Chen. 2007. Glycated Collagen I Impairs Angiogenesis In Vitro - A Study Using An ...
Article Dynamic mechanisms of blood vessel growth
Roeland M.H. Merks and James A. Glazier. 2006. Dynamic mechanisms of blood vessel growth. Nonlinearity, 19, C1-C10.
Article Cell elongation is key to in silico replication of in vitro vasculogenesis and subsequent remodeling
Roeland M.H. Merks, Sergey V. Brodsky, Michael S. Goligorsky, Stuart A. Newman, and James A. Glazier. 2006. Cell elongation is key to in silico replication of ...
Article Endothelial microparticles affect angiogenesis in vitro: the role of oxidative stress
Alexandre Mezentzev, Roeland M.H. Merks, Edmond O'Riordan, Jun Chen, Michael S. Goligorsky and Sergey V. Brodsky. 2005. Endothelial microparticles affect ...
Article A Cell-Centered Approach to Developmental Biology
Roeland M. H. Merks and James A. Glazier. 2005. A Cell-Centered Approach to Developmental Biology. Physica A, 352, 113-130.
Article VirtualLeaf: an Open Source framework for cell-based modeling of plant tissue growth and development
Roeland M. H. Merks, Michael Guravage, Dirk Inzé, Gerrit T.S. Beemster. VirtualLeaf: an Open Source framework for cell-based modeling of plant tissue growth ...
Article Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling
Krzysztof Wabnik, Jürgen Kleine-Vehn, Jozef Balla, Michael Sauer, Satoshi Naramoto, Vilém Reinöhl, Roeland M H Merks, Willy Govaerts & Jiří Friml. Emergence of ...
Article SHORT-ROOT and SCARECROW regulate leaf growth in Arabidopsis by stimulating S-phase progression of the cell cycle
Stijn Dhondt, Frederik Coppens, Freya De Winter, Kamal Swarup, Roeland M.H. Merks, Dirk Inzé, Malcolm J. Bennett, and Gerrit T.S. Beemster. 2010. SHORT-ROOT ...
Article Modeling lignin polymerization. Part 1: simulation model of dehydrogenation polymers
Frederik R.D. van Parijs, Kris Morreel, John Ralph, Wout Boerjan*, and Roeland M.H. Merks* (*equal contributions). 2010. Modeling lignin polymerization. Part ...
Article Canalization without flux sensors: a traveling-wave hypothesis
Roeland M.H. Merks, Yves Van de Peer, Dirk Inzé, and Gerrit Beemster. 2007. Canalization without flux sensors: a traveling-wave hypothesis. Trends in Plant ...
Article The Glazier–Graner–Hogeweg Model: Extensions, Future Directions, and Opportunities for Further Study
Ariel Balter, Roeland M.H. Merks, Nikodem J. Poplawski, Maciej Swat and James A. Glazier. 2008. The Glazier–Graner–Hogeweg Model: Extensions, Future ...
Article Morphogenesis of the branching reef coral Madracis mirablis
Jaap A. Kaandorp, Peter M. A. Sloot, Roeland M. H. Merks, Rolf P.M. Bak, Mark J. A. Vermeij, and Cornelia Maier. 2005. Morphogenesis of the branching reef ...
Article Polyp Oriented Modelling of Coral Growth
Roeland M. H. Merks, Alfons G. Hoekstra, Jaap A. Kaandorp, and Peter M. A. Sloot. 2004. Polyp Oriented Modelling of Coral Growth. Journal of Theoretical ...
Article Models of coral growth: Spontaneous branching, compactification and the Laplacian growth assumption
Roeland M. H. Merks, Alfons G. Hoekstra, Jaap A. Kaandorp, and Peter M. A. Sloot. 2003. Models of coral growth: Spontaneous branching, compactification and the ...
Article Diffusion limited growth in laminar flows
R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. 2003. Diffusion limited growth in laminar flows. International Journal of Modern Physics C, ...