Publications

Morphogenesis of the branching reef coral Madracis mirablis

Jaap A. Kaandorp, Peter M. A. Sloot, Roeland M. H. Merks, Rolf P.M. Bak, Mark J. A. Vermeij, and Cornelia Maier. 2005. Morphogenesis of the branching reef coral Madracis mirablis. Proceedings of the Royal Society B, 272, 127-134.

A Cell-Centered Approach to Developmental Biology

Roeland M. H. Merks and James A. Glazier. 2005. A Cell-Centered Approach to Developmental Biology. Physica A, 352, 113-130.

Endothelial microparticles affect angiogenesis in vitro: the role of oxidative stress

Alexandre Mezentzev, Roeland M.H. Merks, Edmond O'Riordan, Jun Chen, Michael S. Goligorsky and Sergey V. Brodsky. 2005. Endothelial microparticles affect angiogenesis in vitro: the role of oxidative stress. American Journal of Physiology - Heart C, 289, H1106-H1114.

Polyp Oriented Modelling of Coral Growth

Roeland M. H. Merks, Alfons G. Hoekstra, Jaap A. Kaandorp, and Peter M. A. Sloot. 2004. Polyp Oriented Modelling of Coral Growth. Journal of Theoretical Biology, 228, 559-576.

Cell-Oriented Modeling of in vitro Capillary Development

Roeland M.H. Merks, Stuart A. Newman, and James A. Glazier. 2004. Cell-Oriented Modeling of in vitro Capillary Development. In Peter M.A. Sloot, et al. editors, From individual to collective behaviour. Sixth international conference on Cellular Automata for Research and Industry, volume 3305 of Lecture Notes in Computer Science, pages 425-434, Amsterdam, The Netherlands.

Diffusion limited growth in laminar flows

R. M. H. Merks, A. G. Hoekstra, J. A. Kaandorp, and P. M. A. Sloot. 2003. Diffusion limited growth in laminar flows. International Journal of Modern Physics C, 14 (9), 1171-1182.

Models of coral growth: Spontaneous branching, compactification and the Laplacian growth assumption

Roeland M. H. Merks, Alfons G. Hoekstra, Jaap A. Kaandorp, and Peter M. A. Sloot. 2003. Models of coral growth: Spontaneous branching, compactification and the Laplacian growth assumption. Journal of Theoretical Biology, 224, 153-166.

Branching Growth in Stony Corals

Roeland M. H. Merks. 2003. Branching Growth in Stony Corals: a modelling approach. PhD thesis, University of Amsterdam.

A problem solving environment for modelling stony coral morphogenesis

Roeland Merks, Alfons Hoekstra, Jaap Kaandorp, and Peter Sloot. A problem solving environment for modelling stony coral morphogenesis. In Peter M.A. Sloot, David Abramson, Alexander V. Bogdanov, Jack J. Dongarra, Albert Y. Zomaya, and Yuriy E. Gorbachev, editors, Computational Science - ICCS 2003, volume 2657 of Lecture Notes in Computer Science, pages 639-648, Melbourne, Australia and St. Petersburg, Russia, 2003.

The moment propagation method for advection-diffusion in the Lattice Boltzmann method: validation and Péclet number limits

R. M. H. Merks, A. G. Hoekstra, and P. M. A. Sloot. 2002 The moment propagation method for advection-diffusion in the Lattice Boltzmann method: validation and Péclet number limits. Journal of Computational Physics, 183:563-576.

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